rs6236459 SNP Detail

Summary

• ID
  rs6236459
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:84242235 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTGAGAGA AGAGTCTGGA
  TCAAGAAAGG CCCTAACCTG GGATTGGATG TTAGGGGTGA ACTCTACAGG AGGAAAGGCA
  AACTTTAAAA AAGAATTGTA TGTGGGTGCG TGGTCTGCAT GTATGCCTAT GTATCATGTA
  CATGCAGTGC CCACAGAAGT CAGAAGAGAA CATCAGATCC TCCGGATCTG GGGTTACAGA
  Y
  GTGAGCTTCC CTGTGGGTGC TGGGAATTGA ACCATTGTCT TTTTCAAGAG CAGTGAGTGT
  TCTTAACTGT TGAGCCATCT CTCCGGCCCC CAGTGTGAAC AGTAACTGAC CAGTAACCCT
  ACCTTGTCAC CTTGCTGTCT TCTCTTACTT CAGGTGGTGT GTTCTTGGGA GCCCCCACAG
  GGTCCGGATT AGGGTGCCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8642192	WI_WGS_6_85161961	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6236459					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:84242235 () rs orientation: forward

Symbol	Name	Function Class
Gm44127	predicted gene, 44127	within coordinates
Gm67871	predicted gene, 67871	within coordinates
Rr633021	regulatory region 633021	1621 bp proximal