rs6235334 SNP Detail

Summary

• ID
  rs6235334
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:84242029 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGCTGGAAG AATGTGAACT
  ACGCAGGCAT GTGGTGGAAC CACACTTGGG ACATCTCCAG ATCATTAGGT GAGGTTTGCA
  GAGACTCTCC AAGCCATTCT GTCTCAGTCT CACACTGTCC ACTTCCACAC GTCCACTCTT
  CAGATTCTCT CTCACTGTGA ACCAAAGTCC TGAAGAGTCC CTGGTCTTCT CAGACACTCG
  M
  ACTTCCTGTG AGAGAAGAGT CTGGATCAAG AAAGGCCCTA ACCTGGGATT GGATGTTAGG
  GGTGAACTCT ACAGGAGGAA AGGCAAACTT TAAAAAAGAA TTGTATGTGG GTGCGTGGTC
  TGCATGTATG CCTATGTATC ATGTACATGC AGTGCCCACA GAAGTCAGAA GAGAACATCA
  GATCCTCCGG ATCTGGGGTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8641066	WI_WGS_6_85161755	WI	MOUSE	f	SNP							A		C
ss60904651	NES15950433	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A		A		A	A	A	A	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6235334					SNP	A	A	A	A	A	A	A	A	C	A	A	A	A	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60904651	NES15950433	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:84242029 () rs orientation: forward

Symbol	Name	Function Class
Gm44127	predicted gene, 44127	within coordinates
Gm67871	predicted gene, 67871	within coordinates
Rr633021	regulatory region 633021	1827 bp proximal