rs6227542 SNP Detail

Summary

• ID
  rs6227542
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:129324720 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCTTGGCT GACCTGGATC
  TTGTTACTAG ACCAGGCTAA TCTCAAACTC ACAAAAATCC ACATGCTTCT GACTCCAGAG
  TGTATTAGGA TTAAGGACAT ACCCACCCCC CAATTAAGGA CATACCCCAC CCTTTTAAGA
  CTTGGGGGGC AGGGGAAGCA AGGATGTCAC TGTGAAATTC AGACTCACCT CAAATTTCTG
  K
  CAATTTTACT AGCACCAGTC TTCCCGCCTC AGCCTCCAGT GTCTTCCTGA GATGATCTGA
  CTGCATGAAA TGCCCTCGCC TCATTTTAGT TGGCTGGTAG GTGAGGAAAT GAACATCTTA
  GAGGGTATTT TCTCTCTGGT CCTAATGTAC ATCTTTAAAC TAATAGGTTC TTAGCTGGGC
  TGTGGTGGCC CGAACCTTAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8633251	WI_WGS_3_130030993	WI	MOUSE	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6227542					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:129324720 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13814	CpG island 13814	934 bp proximal
Elovl6	ELOVL fatty acid elongase 6	1315 bp upstream
Gm35986	predicted gene, 35986	within coordinates
Rr375731	regulatory region 375731	805 bp downstream
Rr585018	regulatory region 585018	622 bp proximal
Rr585019	regulatory region 585019	1091 bp proximal
Rr585020	regulatory region 585020	1234 bp proximal
Rr585021	regulatory region 585021	1254 bp proximal
Rr585022	regulatory region 585022	1326 bp proximal
Tssr31642	transcription start site region 31642	1326 bp upstream
Tssr31643	transcription start site region 31643	1382 bp upstream
Tssr31644	transcription start site region 31644	1565 bp upstream
Tssr35616	transcription start site region 35616	925 bp downstream