rs6226850 SNP Detail

Summary

• ID
  rs6226850
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:167959178 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAAGATCTC CTGTAGCCCA
  GGGTGGTGTC GAACCTAACC CACTATGTAA CTAAGGATAA CGACTCTTGA TCCTCCTGCT
  TCTATCTGGG AAGTGCTGTG AGGCACAGCA CCCGGTCTGA TTAAAAACCT CCCTGTGGGT
  TTTTAACCTG CAGCCAGAGC TGGTTTACAG CCGCTCTCCT AGGCTGTTGG GGATGCAACG
  S
  GAGAGCGCAG CACCCGAGCT TCCCGCGTTG TGGCCGCTGC AGAGCGCGGT GCTGCCACTG
  GGCGGCGCTG CTCGCTCGGC CGGCGGCCGG CCCAGCGACC GCACCTGCTC CGCCTCCGCC
  AGGCCGACCT CCGGGCTATG GCACCAGGTC AGGGCAGGGC ATCCTTCTGG ACGCCGATCA
  GCTTGAGCCG GTGAGCACTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8632558	WI_WGS_2_169114326	WI	MOUSE	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6226850					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:167959178 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12763	CpG island 12763	within coordinates
Gm52960	predicted gene, 52960	within coordinates
Rr374237	regulatory region 374237	1162 bp downstream
Rr570894	regulatory region 570894	1621 bp distal
Rr570896	regulatory region 570896	within coordinates
Rr570897	regulatory region 570897	51 bp proximal
Rr570898	regulatory region 570898	1877 bp proximal
Tssr27826	transcription start site region 27826	1912 bp downstream