rs6222130 SNP Detail

Summary

• ID
  rs6222130
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:66302491 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         TAAAGTCAAG
  AGCTCCCCTA AAACTTTTGC ATAGCGAATT CCCAGAGTTC TGAAAATGAT CATCTGAATC
  ATTGNAGTAA GCTTTACTAC TTAAAGAGAA GAGAATTTCC AGAANGCTTT ATTCATTTAT
  TTCCTTAGAT ATCTTGAAAA TACAAGTTCA TTAAGATTTT GAACCCAAAA CCTCAAATTA
  ATTGTGATAT TTAATTTTGA ATCACAAAAG AGTGGGCAGT TACTCTTAAG AATAAAAATC
  W
  TGACAgggtg agggtgatgc acacctttaa ccctagtact caggaggcag agacaagagg
  atctctgagt ttgtggtcag cttggtctac agagagattt ccaggacaac cagagaaact
  gtctctaaaa atccaacaaC aacaaaacaa aacaaaacaa aaacaaaata aaacaacaaa
  aacaaggcaa acaaaacata aaacaaaaAG TATATGGTAC ACTTGTTTTC TGGAGGCAGC
  ATATAAATAT                                                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8627830	WI_WGS_2_67229144	WI	MOUSE	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6222130					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:66302491 () rs orientation: forward

Symbol	Name	Function Class
Gm13629	predicted gene 13629	within coordinates
Rr558187	regulatory region 558187	1140 bp proximal
Rr558188	regulatory region 558188	1235 bp proximal
Rr558189	regulatory region 558189	1594 bp proximal