rs6221537 SNP Detail

Summary

• ID
  rs6221537
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:66302355 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         TTCCTGTTAT
  TTTGATGTTG TAGAATTTGC CTACATATAT AAGTATGCtg tagtggtata attaagaatg
  gcctccatag gctcatatat agactggctt ggccaccagt ctattatgga actCGCTGAT
  CTTCCCTAAA GTCAAGAGCT CCCCTAAAAC TTTTGCATAG CGAATTCCCA GAGTTCTGAA
  AATGATCATC TGAATCATTG NAGTAAGCTT TACTACTTAA AGAGAAGAGA ATTTCCAGAA
  R
  GCTTTATTCA TTTATTTCCT TAGATATCTT GAAAATACAA GTTCATTAAG ATTTTGAACC
  CAAAACCTCA AATTAATTGT GATATTTAAT TTTGAATCAC AAAAGAGTGG GCAGTTACTC
  TTAAGAATAA AAATCNTGAC AGGGTGAGgg tgatgcacac ctttaaccct agtactcagg
  aggcagagac aagaggatct ctgagtttgt ggtcagcttg gtctacagag agatttccag
  gacaaccagA                                                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8627237	WI_WGS_2_67229008	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6221537					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:66302355 () rs orientation: forward

Symbol	Name	Function Class
Gm13629	predicted gene 13629	within coordinates
Rr558187	regulatory region 558187	1276 bp proximal
Rr558188	regulatory region 558188	1371 bp proximal
Rr558189	regulatory region 558189	1730 bp proximal