rs6209087 SNP Detail

Summary

• ID
  rs6209087
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:88677806 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCAGCGGGTG GCTGTGGGCA ACAGCTTTTT TTTAATGGTT
  TTTATTCATA TTTATTTAGT TAGTTATTTA TTTTTATAAC CAAGAGCGTG GAGTCAAGGA
  S
  TTAGGTCTTT TGGTCCATGC AGAGTCTCGT GTCCTTGGGA ACAACCCTGC CTTGGAAGCG
  AGTACTTATC ACGACCATGC ACCACGAAAG ATCAAGCCC                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
ss8614742	WI_WGS_4_86171762	WI	MOUSE	f	SNP	C	G
ss321203819	CHEV_4_88405473	CHEVERUD	SCREENING_POP	f	SNP			G	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
rs6209087					SNP	C	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:88677806 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14431	CpG island 14431	1808 bp distal
Gm13283	predicted gene 13283	1205 bp upstream
Gm13286	predicted gene 13286	1189 bp downstream
Rr595033	regulatory region 595033	1500 bp distal
Rr595034	regulatory region 595034	1927 bp distal
Rr595035	regulatory region 595035	1748 bp distal
Rr595036	regulatory region 595036	1406 bp distal
Rr595037	regulatory region 595037	497 bp distal
Rr595038	regulatory region 595038	264 bp proximal
Rr595039	regulatory region 595039	502 bp proximal
Rr595040	regulatory region 595040	998 bp proximal
Rr595041	regulatory region 595041	1161 bp proximal
Rr595042	regulatory region 595042	1503 bp proximal