rs6205334 SNP Detail

Summary

• ID
  rs6205334
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:16716751 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         atcctcagag
  ctacaataga ccaggcactg ctcgctgtag gcatgtagta gccctggatc ttgagaagtg
  gaggcaggag gatcagaagt ccaaagttct ggttatatag caaattcaag accagcctag
  gagacgagat cTCAGGGGTA AAAAGAATGA AAGAAAGAAA CTTGTAGtga tgctcaaatt
  ctctgaattg actcgtggta cccttcaaga tggcttctgt gtccttaaag gttttttctt
  W
  ttctttgact gtaccctagc tttctgaacc caaacgacat cgcaggctta ctttgtatct
  tctttgtccc cctgcctgga aacctctcct ttctcaaatg agAAAGGTAT GAGGCGCTGA
  CCCTTCACTT CCCAGTGACC CCTCTTTGCC TTAGTTTCTG ATTTCAAAGC AGCAGGATCT
  GCCAATAGAG GAGGTGATGC TCTGGCGGTT GCCATGGTGA CCACAGGGCT TCAGCGCTCG
  GGGAAGCTAT                                                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8610982	WI_WGS_7_12122080	WI	MOUSE	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6205334					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:16716751 () rs orientation: forward

Symbol	Name	Function Class
Pnma8c	PNMA family member 8C	257 bp upstream
Rr642835	regulatory region 642835	within coordinates
Tssr64666	transcription start site region 64666	239 bp upstream
Tssr64667	transcription start site region 64667	347 bp upstream