rs6205041 SNP Detail

Summary

• ID
  rs6205041
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:146190597 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGAAGAGC TCAGAGTACT
  TCTAGGCATT GGTCTGCTGT CCATCTTACT GCATGCCCTC AAGCCCTACA TTCTTTTCAG
  TGGCCTGTGT GAGCCCCATA AATAAAGGCT GAGATAAGAC CCCTACCTTT AGAATAGCCT
  TGAGCCTATA GCAACATCCT GCTATTTGCC ACATCCTGGG CTCAAGAACT AACTCTTAGT
  Y
  TTTCAATTCC TTCTTTACTG TGCCCTGAAC ATCTGCTTGT GGGCTTCTGC TTCAGGAGAC
  TGCTCCTGCC CTCTCAAGGT CCTGTTGTCA GCACCCCCGG GCCTGACAGG GACCCTAGCT
  GGTTAGAAGC ATTTTCCTGC AGTGAATAAA GTTGCTTTTG GTTTATTTCT GACTTCAGTG
  GTCCTTTCGT CATTATTTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8610688	WI_WGS_3_147020414	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6205041					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146190597 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr587033	regulatory region 587033			1737 bp proximal
Rr587034	regulatory region 587034			1746 bp proximal
Rr587035	regulatory region 587035			1807 bp proximal
Spata1	spermatogenesis associated 1			Intron
				Noncoding-Transcript-Variant