rs6200489 SNP Detail

Summary

• ID
  rs6200489
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:83847334 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         CGTGTGTGTG
  TATGGTGTTA TAATAATAAT Tgttcaatct ctaacaccca catggacagc ccaaaactgt
  ctgtaactcc agttccaatg catctgatat cctcACACCA ATGTACATAG TGTTTATATA
  TATATATAAG TTGACTATTT TTTAAATATG CACTATGTAT GATTTGTAGA ATGGTAGAAT
  ATGCAGTATC TCATCCAAAA TAACATTAAA TGTCAGGATA ATCATTTGAG TGCAACATTT
  R
  CACTTTTGTT TACTAAATAG TAATTTTGAG CTCATATTTT TGGTAATGTA TCATTAAAGA
  AATATTGCAA AAATACAAAA CAAAAAAACC CAAAAAGTGC CTAGTtgttc tagtttcctt
  actcttctta tgataaatac tctgaccaaa aataactcgg gaggagaggg tttgtttggc
  ttactcttcc aggtcgtagt ctctcactga aggaagtcag agcaggagct cgaggcaaga
  accatgaggA                                                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8606126	WI_WGS_6_84759305	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6200489					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:83847334 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm44750	predicted gene 44750			within coordinates
Rr632959	regulatory region 632959			1849 bp distal
Zfp638	zinc finger protein 638			Intron
				Noncoding-Transcript-Variant