rs6195446 SNP Detail

Summary

• ID
  rs6195446
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:118844232 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCCTTTCGCC CTCTGCTCCT CCCTGTTCCA GAGACAGCTG
  CATCTTCTTG TGCAGTGCCA GCCTCGTCCC ATAGGCAAGA TGGTGAATGT CACTGTGAAC
  R
  GTTTTGGCCG TATTGGGCGC TTAGTTACCA GGGCTGCTTT CTGCTCTGCA TCTGGCAAAG
  TGGAAATTAT TACCATCAAA AACCCCTTCA TTGACCTCA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8601071	WI_WGS_4_116889113	WI	MOUSE	f	SNP								A		G
ss37686057	NES09200276	PERLEGEN	MM_PANEL2	f	SNP	A		G	A	A	A	A		G		G	A	A	G	A	A	G	A
ss45571956	mCV24288494	ABI	CRAMUS_MOUSE	f	SNP		A	G					A			G
ss147321660	ENSMUSSNP2164127	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G								G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6195446					SNP	A	A	G	A	A	A	A	A	G	G	G	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37686057	NES09200276	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:118844232 () rs orientation: forward

Symbol	Name	Function Class
Gm12861	predicted gene 12861	within coordinates
Gm12864	predicted gene 12864	within coordinates
Gm12865	predicted gene 12865	within coordinates
Rr598446	regulatory region 598446	1590 bp proximal
Rr598447	regulatory region 598447	1680 bp proximal
Tssr38691	transcription start site region 38691	91 bp downstream
Tssr38692	transcription start site region 38692	435 bp upstream