rs6191338 SNP Detail

Summary

• ID
  rs6191338
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:16716465 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         Tcctcatctg
  acctgcatgg catcaggcat gcatgtgcta cacagacata caagcagaca aaacactcag
  acataatata taaaaaGCAT TTAAAAAGGA ACGATTTTTA AAAATAACTT TCCACCTGTG
  TATGTATTTA CATGGCTCCA CCTGTTCTTA GTTTATTCAG GAAGTATTAA TGTTTGTTAC
  TGTCTGTTAC AATCTGTTGA TTTGAACATC AATGCTCAgg caggagtgtt tcccagctgg
  Y
  agatgctttc ctgccatgct aggagcctgg tttccatcct cagagctaca atagaccagg
  cactgctcgc tgtaggcatg tagtagccct ggatcttgag aagtggaggc aggaggatca
  gaagtccaaa gttctggtta tatagcaaat tcaagaccag cctaggagac gagatcTCAG
  GGGTAAAAAG AATGAAAGAA AGAAACTTGT AGTGATGCTC AAATTCTCTG AATTGACTCG
  TGGTACCCTT                                                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8596947	WI_WGS_7_12121794	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6191338					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:16716465 () rs orientation: forward

Symbol	Name	Function Class
Pnma8c	PNMA family member 8C	543 bp upstream
Rr642834	regulatory region 642834	1734 bp distal
Rr642835	regulatory region 642835	56 bp proximal
Tssr64666	transcription start site region 64666	525 bp upstream
Tssr64667	transcription start site region 64667	633 bp upstream