rs6189415 SNP Detail

Summary

• ID
  rs6189415
• Variation Type
  SNP
• Alleles
  A/C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:118606428 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGCC TGGGAAGGGC GGAGTGCTGC
  H
  GCATCCGCCC ACCCCCTGCC AACTG                                      
  
  H = A/C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
ss8595010	WI_WGS_2_119722655	WI	MOUSE	f	SNP		A	C
ss147312561	ENSMUSSNP7123064	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss320471744	CHEV_2_118601683	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
rs6189415					SNP	T	A	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118606428 () rs orientation: forward

Symbol	Name	Function Class
Gm54146	predicted gene, 54146	1348 bp upstream
Phgr1	proline/histidine/glycine-rich 1	Intron
Rr563336	regulatory region 563336	1021 bp distal
Rr563337	regulatory region 563337	44 bp distal
Rr563338	regulatory region 563338	within coordinates