rs6189412 SNP Detail

Summary

• ID
  rs6189412
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:118606424 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         CTAGCATCGG
  AGAAGAGGCA GGGGCAAGTT GTCCCCTTCA AAACCAAAGG ACTGAAACCA CTCTCTTTTC
  CCCCTTTCTC TCTAACAGGT GGCAAGGTAG GCACATTCTC GAGCCTTCCT CCCTCCCCTT
  CTTTGTgccc cccccccccc ccccggcTGC TTCTTTCAGA CCTCTCACCT CCTTCTTGGA
  CCAGGACTTT GCCAAATGAA GCCAGGAAGA CTCAGGCAGC AGCCTGGGAA GGGCGGAGTG
  M
  TGCNGCATCC GCCCACCCCC TGCCAACTGC AACCTTCTCC TTGGCAATCT CTCCTCTGTT
  TTCCCATCTG TCTCTCTCCT TTCCTTACTT CCCTCCCCTG GCCCAGCAGC CCATCCTCTC
  CCCTGCTAGT TCCCAGCCTG TTCTGTGCTT CCCTGGCTGG CTGGCTTGCT TGCTCTCAAG
  CCCCAGCCAC ACTGCAGGCC TGCTAGGCCA GGCTTCTGCA AGGGAAGGAA GGGAAGGCTG
  CCTGCTCACT                                                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8595007	WI_WGS_2_119722651	WI	MOUSE	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6189412					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118606424 () rs orientation: forward

Symbol	Name	Function Class
Gm54146	predicted gene, 54146	1344 bp upstream
Phgr1	proline/histidine/glycine-rich 1	Intron
Rr563336	regulatory region 563336	1017 bp distal
Rr563337	regulatory region 563337	40 bp distal
Rr563338	regulatory region 563338	within coordinates