rs6188535 SNP Detail

Summary

• ID
  rs6188535
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:94151229 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         GTACGAAAGG
  GAAAGGGAAG GGAGAGGGAA GAAGGTCAAG TAGAGAGATG TTTGCAAAAT GTATGCAAAA
  ACTCCCACTC CCATATGGGA TGACATAAGA TCCCCCACTG GGAATNTCCC AGAGGAAATA
  ATCAGAAGAT GGATGCTATT TCTGTCAATA GACAGAAAAC TAGAAAAACG TTGGCTCAAA
  TACTAGATGG TCTCCTAAGA TTCTTTGCAN CAAATATTAA AAAAAAAATG GCACCAGTGA
  W
  CTTANTGCTC CAAAGAATGA AAGACTCTTG GACAAGAGAC CCAAATGTTA CACCTTGAAT
  AAGTTCACAG CTGGCCACTG ACTGAAGCCT CAATAGAATG TCTCCTTGAG AAAATATAGA
  TTTCagagat gggattcttt ttttttcagt ttttctcttt ttttaattag gtatttattt
  catttacatg tccaatgcta tcccaaaagt ccccaaccac ccactcccac ttcttggtcc
  tggcgttccc                                                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8594128	WI_WGS_4_91997555	WI	MOUSE	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6188535					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:94151229 () rs orientation: forward

Symbol	Name	Function Class
Gm12648	predicted gene 12648	within coordinates
Rr595320	regulatory region 595320	1654 bp distal