rs6188474 SNP Detail

Summary

• ID
  rs6188474
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:94151198 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         ACTAGAATgg
  aaagggaaga gaagggaagg agtacgaaag ggaaagggaa gggagaggga agAAGGTCAA
  GTAGAGAGAT GTTTGCAAAA TGTATGCAAA AACTCCCACT CCCATATGGG ATGACATAAG
  ATCCCCCACT GGGAATNTCC CAGAGGAAAT AATCAGAAGA TGGATGCTAT TTCTGTCAAT
  AGACAGAAAA CTAGAAAAAC GTTGGCTCAA ATACTAGATG GTCTCCTAAG ATTCTTTGCA
  S
  CAAATATTAA AAAAAAAATG GCACCAGTGA NCTTANTGCT CCAAAGAATG AAAGACTCTT
  GGACAAGAGA CCCAAATGTT ACACCTTGAA TAAGTTCACA GCTGGCCACT GACTGAAGCC
  TCAATAGAAT GTCTCCTTGA GAAAATATAG ATTTCagaga tgggattctt tttttttcag
  tttttctctt tttttaatta ggtatttatt tcatttacat gtccaatgct atcccaaaag
  tccccAACCA                                                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8594067	WI_WGS_4_91997524	WI	MOUSE	f	SNP							G		C
ss38260117	NES09543371	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G		C		G	G	G	C	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6188474					SNP	G	G	G	G	G	G	G	C	C	G	G	G	C	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38260117	NES09543371	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:94151198 () rs orientation: forward

Symbol	Name	Function Class
Gm12648	predicted gene 12648	within coordinates
Rr595320	regulatory region 595320	1623 bp distal