rs6187980 SNP Detail

Summary

• ID
  rs6187980
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:94151094 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTAACACA GTTAAAATTC
  CTGGTGATGG ACACAGCAAA TCATGTGTTC TACCACTAGA ATGGAAAGGG AAGAGAAGGG
  AAGGAGTACG AAAGGGAAAG GGAAGGGAGA GGGAAGAAGG TCAAGTAGAG AGATGTTTGC
  AAAATGTATG CAAAAACTCC CACTCCCATA TGGGATGACA TAAGATCCCC CACTGGGAAT
  W
  TCCCAGAGGA AATAATCAGA AGATGGATGC TATTTCTGTC AATAGACAGA AAACTAGAAA
  AACGTTGGCT CAAATACTAG ATGGTCTCCT AAGATTCTTT GCAGCAAATA TTAAAAAAAA
  AATGGCACCA GTGATCTTAC TGCTCCAAAG AATGAAAGAC TCTTGGACAA GAGACCCAAA
  TGTTACACCT TGAATAAGTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8593572	WI_WGS_4_91997420	WI	MOUSE	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6187980					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:94151094 () rs orientation: forward

Symbol	Name	Function Class
Gm12648	predicted gene 12648	within coordinates
Rr595320	regulatory region 595320	1519 bp distal