rs6186740 SNP Detail

Summary

• ID
  rs6186740
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:116458226 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGTGTAGAG GATTAAGAAG
  GTTGTTCTAA GGTAGGCGTG GTGGTGCATA TCTTCGGTCC TGGCATTTGT GTTGTAGAGA
  CAGTGTGACC AGGAGTTCAA GGCCAGCCTC TACAGCAAAT TCAAGGTTAG CCCCAGGCTA
  CATGAAAACC AGACTGAGCT GGGCGTGGTG GCGCACGCCT TTAATCCCAG CACTTGGGAG
  Y
  CAGAGGCAGG CGGATTTCTG AGTTCGAGGC CAGCCTGGAC TACAGAGTGA GGTCCAGGAC
  AGCCAGGGCT ATACAGAGAA ACCCTGTCCC GAAAAACCAA AAACAAAATA AAATGAAAGA
  CTGGAAAAAA ATACTATGTG GTTACTCCAA CTTTTTATGA CCTCCAAAAA TCATACTTCA
  GCTATATCAA AGTTACTTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss8592330	WI_WGS_3_117002573	WI	MOUSE	f	SNP	C			T
ss135670776	ENSMUSSNP2915840	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs6186740					SNP	C	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116458226 () rs orientation: forward

Symbol	Name	Function Class
4930512P04Rik	RIKEN cDNA 4930512P04 gene	422 bp downstream
Cpgi13738	CpG island 13738	1549 bp distal
Gm43191	predicted gene 43191	Intron
Mfsd14a	major facilitator superfamily domain containing 14A	1962 bp upstream
Rr375625	regulatory region 375625	within coordinates
Rr397966	regulatory region 397966	1776 bp downstream
Rr583758	regulatory region 583758	1911 bp distal
Rr583759	regulatory region 583759	1410 bp distal
Tssr35328	transcription start site region 35328	1993 bp upstream
Tssr35329	transcription start site region 35329	1936 bp upstream
Tssr35330	transcription start site region 35330	1923 bp upstream