rs6183266 SNP Detail

Summary

• ID
  rs6183266
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:119336987 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGGAAGCA GGAGAATTAC
  AAATTCAAAG CCACCCTCAG CAACAGAGGA ATCTGAGGTA GCCTGGGATC TATAAGGCTC
  TGAGAAAGAA AACAAGGTGG GGTGGGGAAG ATAATCTCTC ATTCATCTAA GGACCACAAT
  CCAACAAGAA GCCAGAGAGG ACAGTTACCT CTTAAGAGTT AAGCTGACCT GCTACTTACG
  M
  AGTTCTCACA CATACGCTTA GAGGTGCTTT CAAAGCTCTA CTTTACATCT GTTTATGGAT
  GCTCAAGAAT CCTGTGCTGT TCCTCTGGTC CTTACTAGCT GTCCCAGTAC ATCACTGTCA
  CAAACTCCAT ACCTAGCCAT TTGCTTTGTT TGAGAATGGG TCTCAGTACT ATGTAGTCCT
  GGCTAGCCTG GAGTTCACGC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8588844	WI_WGS_6_120152335	WI	MOUSE	f	SNP					A		C
ss48075477	NES11873935	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A		C		A	A	A	C	A	A	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6183266					SNP	A	A	A	A	A	C	C	A	A	A	C	A	A	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48075477	NES11873935	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:119336987 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Adipor2	adiponectin receptor 2			Intron
				Noncoding-Transcript-Variant
Rr637644	regulatory region 637644			617 bp proximal
Tssr62709	transcription start site region 62709			509 bp upstream