rs6182154 SNP Detail

Summary

• ID
  rs6182154
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:118844097 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         Actgctcttc
  cagaggacct gggttcagtt tccagccccc acatggtggc tcaaaaccat ctgtaactct
  agcgccaggg gatccaatga cctcttctga cctctgcagg tacccagcag tcacatggta
  cacatacaca catgcaaaca aagcccacat atacataaac tgaaTGAAAA ATTTTTAGCA
  AAACAGTCAA TGCAGCACTT ATTGGAATGT GAATCATAAG GCCAGCCCTC AGTGAATCAG
  Y
  TCCTGTGATA ACCAAGTCCT TTATTTGAAA ACCTTCCTTT CGCCCTCTGC TCCTCCCTGT
  TCCAGAGACA GCTGCATCTT CTTGTGCAGT GCCAGCCTCG TCCCATAGGC AAGATGGTGA
  ATGTCACTGT GAACNGTTTT GGCCGTATTG GGCGCTTAGT TACCAGGGCT GCTTTCTGCT
  CTGCATCTGG CAAAGTGGAA ATTATTACCA TCAAAAACCC CTTCATTGAC CTCAACTGCA
  TGGTCTACAT                                                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8587728	WI_WGS_4_116888978	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6182154					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:118844097 () rs orientation: forward

Symbol	Name	Function Class
Gm12861	predicted gene 12861	within coordinates
Gm12864	predicted gene 12864	114 bp upstream
Gm12865	predicted gene 12865	within coordinates
Rr598446	regulatory region 598446	1725 bp proximal
Rr598447	regulatory region 598447	1815 bp proximal
Tssr38691	transcription start site region 38691	42 bp upstream
Tssr38692	transcription start site region 38692	570 bp upstream