rs6177098 SNP Detail

Summary

• ID
  rs6177098
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:119237934 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCCTTATCA GAGTCACCTT
  GGTCATGGTG TCTGTTCACA GCAGTAAAAC CCTAACTAAG ACACGTGCTT ACTTTAAATA
  TCCATTCTGT ACAGCCACAT CCATGTACAT TTTTTAGTTG TGTGATAAAA CCTGCTAGAG
  AGTCCACCTA AAACTATTAT GTGCCTTAGT GAATATAGAG TGATCATCAT GCAATGCTCT
  R
  TGGAGAGAAA TGACTACCAA GAGTGAGCAC ACCTGGTCGG GCAGAGCCAC ACTGCCTGTT
  TTATCACCAG TGGTGTAAGA GCTGGTCATG TCATTATTCT TAGCCTCAGT TTCCCCAGAT
  GAAAATCAGG GACAGTGGTG GACATAAATA GAATGCTCAG AGACAATACG CTATATTGTT
  CTAAACCCGT CTAAATGAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	CZECHII/EiJ	DBA/2J
ss8582660	WI_WGS_4_117282002	WI	MOUSE	f	SNP		G	A
ss147328365	ENSMUSSNP655748	ENSEMBL	ENSEMBL_Sanger	f	SNP	A			G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	CZECHII/EiJ	DBA/2J
rs6177098					SNP	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:119237934 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ccdc30	coiled-coil domain containing 30			Intron
				Noncoding-Transcript-Variant
Rr598572	regulatory region 598572			923 bp proximal