rs6177097 SNP Detail

Summary

• ID
  rs6177097
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:119237933 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTCCTTATC AGAGTCACCT
  TGGTCATGGT GTCTGTTCAC AGCAGTAAAA CCCTAACTAA GACACGTGCT TACTTTAAAT
  ATCCATTCTG TACAGCCACA TCCATGTACA TTTTTTAGTT GTGTGATAAA ACCTGCTAGA
  GAGTCCACCT AAAACTATTA TGTGCCTTAG TGAATATAGA GTGATCATCA TGCAATGCTC
  Y
  GTGGAGAGAA ATGACTACCA AGAGTGAGCA CACCTGGTCG GGCAGAGCCA CACTGCCTGT
  TTTATCACCA GTGGTGTAAG AGCTGGTCAT GTCATTATTC TTAGCCTCAG TTTCCCCAGA
  TGAAAATCAG GGACAGTGGT GGACATAAAT AGAATGCTCA GAGACAATAC GCTATATTGT
  TCTAAACCCG TCTAAATGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	CZECHII/EiJ	DBA/2J
ss8582659	WI_WGS_4_117282001	WI	MOUSE	f	SNP		T	C
ss147328360	ENSMUSSNP2629831	ENSEMBL	ENSEMBL_Sanger	f	SNP	C			T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	CZECHII/EiJ	DBA/2J
rs6177097					SNP	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:119237933 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ccdc30	coiled-coil domain containing 30			Intron
				Noncoding-Transcript-Variant
Rr598572	regulatory region 598572			924 bp proximal