rs6174143 SNP Detail

Summary

• ID
  rs6174143
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:12751154 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCCATGCA ATACCACTCT
  GCATGGAAGC CTCTTCCTTT CCCTTCTATT TGTATTTCTC AGTTGTCGTT AGTGCTCATC
  CCTGAAGGTC TTCAACCGTG AATGGAATTG TAGATTCTGC GTTATTAATG CCCATTCATA
  GTGTTCTCCA TAAGCCCCAA GTCAATTTAC CAGGTGGAGG CTCCGTGTAT AACAGAATAC
  R
  GAGGGTGGAA GAAGGTAAAT TCGTTAATTT GCAAGTTGAC CACCTACCTC CCAAAAGCCA
  TCAGATGTCA CACTCCATAT CTTAGTGTAA GTAATAATAA TAATAATAAT AATAATAATA
  ATAATAATAA TAATAATAAT TGATTTTTCT TATGTATCCA GGATTGTATA ATAATTACTT
  ATCCATTCCA GAGACTAAAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8579692	WI_WGS_6_12537843	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6174143					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:12751154 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17163	CpG island 17163	1604 bp distal
Rr626539	regulatory region 626539	1913 bp distal
Rr626540	regulatory region 626540	1255 bp distal
Rr626541	regulatory region 626541	within coordinates
Rr626542	regulatory region 626542	1324 bp proximal
Thsd7a	thrombospondin, type I, domain containing 7A	1902 bp upstream
Tssr1780	transcription start site region 1780	1965 bp upstream
Tssr59830	transcription start site region 59830	1988 bp upstream
Tssr59831	transcription start site region 59831	1946 bp upstream
Tssr59832	transcription start site region 59832	1715 bp upstream