rs6174093 SNP Detail

Summary

• ID
  rs6174093
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:12751121 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGCCTCCTA GGTTCTGTCC
  TTCAGAAATG GCTCCTCCAT GCAATACCAC TCTGCATGGA AGCCTCTTCC TTTCCCTTCT
  ATTTGTATTT CTCAGTTGTC GTTAGTGCTC ATCCCTGAAG GTCTTCAACC GTGAATGGAA
  TTGTAGATTC TGCGTTATTA ATGCCCATTC ATAGTGTTCT CCATAAGCCC CAAGTCAATT
  Y
  ACCAGGTGGA GGCTCCGTGT ATAACAGAAT ACGGAGGGTG GAAGAAGGTA AATTCGTTAA
  TTTGCAAGTT GACCACCTAC CTCCCAAAAG CCATCAGATG TCACACTCCA TATCTTAGTG
  TAAGTAATAA TAATAATAAT AATAATAATA ATAATAATAA TAATAATAAT AATTGATTTT
  TCTTATGTAT CCAGGATTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8579642	WI_WGS_6_12537810	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6174093					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:12751121 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17163	CpG island 17163	1571 bp distal
Rr626539	regulatory region 626539	1880 bp distal
Rr626540	regulatory region 626540	1222 bp distal
Rr626541	regulatory region 626541	within coordinates
Rr626542	regulatory region 626542	1357 bp proximal
Thsd7a	thrombospondin, type I, domain containing 7A	1869 bp upstream
Tssr1780	transcription start site region 1780	1932 bp upstream
Tssr59830	transcription start site region 59830	1955 bp upstream
Tssr59831	transcription start site region 59831	1913 bp upstream
Tssr59832	transcription start site region 59832	1682 bp upstream