rs6171790 SNP Detail

Summary

• ID
  rs6171790
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:12750725 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTCATTTTG CTGAGCTTTC
  CAGACATAAC CCTTCTGCAT GCATTAGATT AAAAGCAGGT TTGATCAAAT AATTCCCAGG
  TCCTGCCTGT TTAAGTATTC TGACATCAGA GGAAATTAGC TGCATTCACG GTTGCAAATT
  TGGTCTTTGT TTACTTTTCA CTCTGTTAGG CCTCTAAGAG GGAATTAAAA GCTCAGAGAG
  Y
  CCTGGCCCTG GGCTTGTGAT TAGAGGCGAT AAGCCACTGT GGCTTACTGT TTCTACACTG
  GTGAAAAATA GGCAGTGATC AAAAGATTAT AGGTTGATAG GGATACAAAG GCAGGCTGGT
  CCTAACTAAT GTATACCCCC CTGAAGGAGC AAGTCCTTCA ATATTCACAC TGCCAAAGAA
  GAAAAAGACC TGCCATTGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8577335	WI_WGS_6_12537414	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6171790					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:12750725 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17163	CpG island 17163	1175 bp distal
Rr626539	regulatory region 626539	1484 bp distal
Rr626540	regulatory region 626540	826 bp distal
Rr626541	regulatory region 626541	within coordinates
Rr626542	regulatory region 626542	1753 bp proximal
Thsd7a	thrombospondin, type I, domain containing 7A	1473 bp upstream
Tssr1780	transcription start site region 1780	1536 bp upstream
Tssr59828	transcription start site region 59828	1647 bp upstream
Tssr59829	transcription start site region 59829	1631 bp upstream
Tssr59830	transcription start site region 59830	1559 bp upstream
Tssr59831	transcription start site region 59831	1517 bp upstream
Tssr59832	transcription start site region 59832	1286 bp upstream