rs6162382 SNP Detail

Summary

• ID
  rs6162382
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:119237609 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTGACTCTC AGATGTTATT
  TCCCAAGGAG ACAGTTATTG CTGACTTTTA CGTCCACATC TCCCTAACAA GTGTTGTGGG
  TGGCTTGAAT ATGCATGGCC CAGGGGGTGG CACTACTAGG AGGCATGGAC CTGTTGGAGT
  ATATGTGTCA CTGTGGGAGT GGGCTTTAAG ACCCTCATCC TAGCTGCCTG GAAGTCAGTA
  K
  TCTGCTAGTA ACCTCCAGAT GAAGATGGAG AACTCTCAGC TCCTCCTGCA CCATGCCTGC
  CTTGCTTCTG CCTTGATAAT GGACTGAACC TTTGAACCTG TAAGTCAGCC CCAATTAAAA
  TGTTGTCCTT ATCAGAGTCA CCTTGGTCAT GGTGTCTGTT CACAGCAGTA AAACCCTAAC
  TAAGACACGT GCTTACTTTA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8567902	WI_WGS_4_117281677	WI	MOUSE	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6162382					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:119237609 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ccdc30	coiled-coil domain containing 30			Intron
				Noncoding-Transcript-Variant
Rr598572	regulatory region 598572			1248 bp proximal