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rs6162281 SNP Detail
Summary
  • ID
    rs6162281
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr4:119237551 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                AGGACCACTA TGGGGTAGGA
    GTGTAACTGT TATCACAGTA TCCCCTCAGC GGGAGATGAG TGACTCTCAG ATGTTATTTC
    CCAAGGAGAC AGTTATTGCT GACTTTTACG TCCACATCTC CCTAACAAGT GTTGTGGGTG
    GCTTGAATAT GCATGGCCCA GGGGGTGGCA CTACTAGGAG GCATGGACCT GTTGGAGTAT
    R
    TGTGTCACTG TGGGAGTGGG CTTTAAGACC CTCATCCTAG CTGCCTGGAA GTCAGTATTC
    TGCTAGTAAC CTCCAGATGA AGATGGAGAA CTCTCAGCTC CTCCTGCACC ATGCCTGCCT
    TGCTTCTGCC TTGATAATGG ACTGAACCTT TGAACCTGTA AGTCAGCCCC AATTAAAATG
    TTGTCCTTAT CAGAGTCACC                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
C57BL/6J
CZECHII/EiJ
ss8567801 WI_WGS_4_117281619 WI MOUSE f SNP A G
SNP Consensus Information
SNP Consensus Type
C57BL/6J
CZECHII/EiJ
rs6162281 SNP A G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr4:119237551 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Ccdc30 coiled-coil domain containing 30 Intron
Noncoding-Transcript-Variant
Rr598572 regulatory region 598572 1306 bp proximal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Funding Information
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory