rs6161864 SNP Detail

Summary

• ID
  rs6161864
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:119237507 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTATGGTGA AGACTTTACA
  TGAATGAGCT CACACTGTTT CTGAAGGACC ACTATGGGGT AGGAGTGTAA CTGTTATCAC
  AGTATCCCCT CAGCGGGAGA TGAGTGACTC TCAGATGTTA TTTCCCAAGG AGACAGTTAT
  TGCTGACTTT TACGTCCACA TCTCCCTAAC AAGTGTTGTG GGTGGCTTGA ATATGCATGG
  Y
  CCAGGGGGTG GCACTACTAG GAGGCATGGA CCTGTTGGAG TATATGTGTC ACTGTGGGAG
  TGGGCTTTAA GACCCTCATC CTAGCTGCCT GGAAGTCAGT ATTCTGCTAG TAACCTCCAG
  ATGAAGATGG AGAACTCTCA GCTCCTCCTG CACCATGCCT GCCTTGCTTC TGCCTTGATA
  ATGGACTGAA CCTTTGAACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8567384	WI_WGS_4_117281575	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6161864					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:119237507 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ccdc30	coiled-coil domain containing 30			Intron
				Noncoding-Transcript-Variant
Rr598572	regulatory region 598572			1350 bp proximal