rs6151992 SNP Detail

Summary

• ID
  rs6151992
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:127102446 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             GGTAGAGAGC CCAGGAACAT CCTTGTCATA TGCACTAGAA GATGGGATCA
  R
  CCTTGTAGCT CAAGTGTGCC TCAAAAGAGA GCTATGTTGG GTAAGGACAG           
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37629866	NES09011031	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G		G	A	A	A	G	A
ss45298614	mCV22837145	ABI	CRAMUS_MOUSE	f	SNP		A					A	G
ss147524708	ENSMUSSNP6271567	ENSEMBL	ENSEMBL_Sanger	f	SNP		A						G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6151992					SNP	A	A	A	A	A	G	A	G	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37629866	NES09011031	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:127102446 () rs orientation: forward

Symbol	Name	Function Class
Rr564482	regulatory region 564482	852 bp distal
Tmem127	transmembrane protein 127	mRNA-UTR
Tssr20001	transcription start site region 20001	1899 bp downstream
Tssr20002	transcription start site region 20002	1588 bp upstream