rs587439974 SNP Detail

Summary

• ID
  rs587439974
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:88677764 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AATGG TTTTTATTCA TATTTATTTA
  K
  TTAGTTATTT ATTTTTATAA CCAAG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	DBA/2J	FVB/NJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	RF/J	SEA/GnJ	SM/J	SPRET/EiJ	ST/bJ
ss916911605	MGP_WTSI_4_88759527	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	DBA/2J	FVB/NJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	RF/J	SEA/GnJ	SM/J	SPRET/EiJ	ST/bJ
rs587439974					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss916911605	MGP_WTSI_4_88759527	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:88677764 () rs orientation: forward

Symbol	Name	Function Class
Gm13283	predicted gene 13283	1247 bp upstream
Gm13286	predicted gene 13286	1147 bp downstream
Rr595031	regulatory region 595031	1959 bp distal
Rr595033	regulatory region 595033	1458 bp distal
Rr595034	regulatory region 595034	1885 bp distal
Rr595035	regulatory region 595035	1706 bp distal
Rr595036	regulatory region 595036	1364 bp distal
Rr595037	regulatory region 595037	455 bp distal
Rr595038	regulatory region 595038	306 bp proximal
Rr595039	regulatory region 595039	544 bp proximal
Rr595040	regulatory region 595040	1040 bp proximal
Rr595041	regulatory region 595041	1203 bp proximal
Rr595042	regulatory region 595042	1545 bp proximal