rs587412495 SNP Detail

Summary

• ID
  rs587412495
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:95857015 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGAGA GAGAGAGGGA GAGACACACA
  S
  AGAGAGAGAG AATGAACCAG ATAAG                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ
ss916939640	MGP_WTSI_4_95968778	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	C	G	G	G	C	G	G	C	G	G	C	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ
rs587412495					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	C	G	G	G	C	G	G	C	G	G	C	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss916939640	MGP_WTSI_4_95968778	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:95857015 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
9530080O11Rik	RIKEN cDNA 9530080O11 gene			1123 bp upstream
Hook1	hook microtubule tethering protein 1			Intron
				Noncoding-Transcript-Variant
Rr398349	regulatory region 398349			1515 bp downstream
Rr595499	regulatory region 595499			1820 bp distal
Rr595500	regulatory region 595500			1399 bp distal
Rr595501	regulatory region 595501			633 bp distal
Tssr37834	transcription start site region 37834			1633 bp downstream
Tssr37835	transcription start site region 37835			1458 bp downstream
Tssr37836	transcription start site region 37836			1397 bp downstream
Tssr37837	transcription start site region 37837			1375 bp downstream
Tssr37838	transcription start site region 37838			1352 bp downstream
Tssr37839	transcription start site region 37839			1141 bp upstream
Tssr37840	transcription start site region 37840			1172 bp upstream
Tssr42465	transcription start site region 42465			1761 bp upstream