rs586427904 SNP Detail

Summary

• ID
  rs586427904
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:42562427 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCAAC TCTGTTTTTT GTTTTGTTTT
  K
  TTTTTTGTTT TTTTTTGTTT TTTTT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss917969905	MGP_WTSI_6_42585493	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs586427904					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss917969905	MGP_WTSI_6_42585493	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:42562427 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm38798	predicted gene, 38798			1940 bp upstream
Rr629347	regulatory region 629347			1686 bp distal
Rr629348	regulatory region 629348			1785 bp distal
Tcaf3	TRPM8 channel-associated factor 3			Intron
				Noncoding-Transcript-Variant
Tssr56046	transcription start site region 56046			267 bp downstream
Tssr56047	transcription start site region 56047			118 bp downstream
Tssr56048	transcription start site region 56048			467 bp upstream
Tssr56049	transcription start site region 56049			517 bp upstream
Tssr60620	transcription start site region 60620			247 bp downstream
Tssr60621	transcription start site region 60621			265 bp downstream
Tssr60622	transcription start site region 60622			311 bp downstream
Tssr60623	transcription start site region 60623			367 bp downstream
Tssr60624	transcription start site region 60624			409 bp downstream
Tssr60625	transcription start site region 60625			477 bp downstream
Tssr60626	transcription start site region 60626			492 bp downstream
Tssr60627	transcription start site region 60627			508 bp downstream
Tssr60628	transcription start site region 60628			652 bp downstream
Tssr60629	transcription start site region 60629			707 bp downstream
Tssr60630	transcription start site region 60630			776 bp downstream
Tssr60631	transcription start site region 60631			820 bp downstream
Tssr60632	transcription start site region 60632			872 bp downstream
Tssr60633	transcription start site region 60633			898 bp downstream
Tssr60634	transcription start site region 60634			911 bp downstream
Tssr60635	transcription start site region 60635			977 bp downstream
Tssr60636	transcription start site region 60636			1082 bp downstream
Tssr60637	transcription start site region 60637			1338 bp downstream
Tssr60638	transcription start site region 60638			1378 bp downstream
Tssr60639	transcription start site region 60639			1429 bp downstream
Tssr60640	transcription start site region 60640			1684 bp downstream