rs586004642 SNP Detail

Summary

• ID
  rs586004642
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:88676901 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GATGA TCTCGGTTTT CCTTGGGAGG
  W
  TTCGATCACA GATGGGGGAT GCCCA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	FVB/NJ	MA/MyJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	WSB/EiJ	ZALENDE/EiJ
ss916911602	MGP_WTSI_4_88758664	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	T	T	T	A	A	T	A	A	A	T	T	A
SNP Consensus Information
SNP					Consensus Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	FVB/NJ	MA/MyJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	WSB/EiJ	ZALENDE/EiJ
rs586004642					SNP	A	A	A	A	A	A	A	A	A	T	T	T	A	A	T	A	A	A	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss916911602	MGP_WTSI_4_88758664	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:88676901 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14431	CpG island 14431	903 bp distal
Gm13286	predicted gene 13286	284 bp downstream
Rr595031	regulatory region 595031	1096 bp distal
Rr595032	regulatory region 595032	1536 bp distal
Rr595033	regulatory region 595033	595 bp distal
Rr595034	regulatory region 595034	1022 bp distal
Rr595035	regulatory region 595035	843 bp distal
Rr595036	regulatory region 595036	501 bp distal
Rr595037	regulatory region 595037	387 bp proximal
Rr595038	regulatory region 595038	1169 bp proximal
Rr595039	regulatory region 595039	1407 bp proximal
Rr595040	regulatory region 595040	1903 bp proximal