rs585475877 SNP Detail

Summary

• ID
  rs585475877
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:34707286 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTAT TCCCCCCCCC TTTCTCCCCC
  A
  CCCCCCCCCC CACTCCGGAT TCCAC                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	CAST/EiJ	CE/J	MA/MyJ	NON/ShiLtJ	NZW/LacJ	RIIIS/J	SPRET/EiJ	ST/bJ	SWR/J
ss916027608	MGP_WTSI_3_34653137	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	CAST/EiJ	CE/J	MA/MyJ	NON/ShiLtJ	NZW/LacJ	RIIIS/J	SPRET/EiJ	ST/bJ	SWR/J
rs585475877					SNP	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss916027608	MGP_WTSI_3_34653137	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:34707286 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13072	CpG island 13072	1608 bp distal
Gm54566	predicted gene, 54566	41 bp upstream
Gm64654	predicted gene, 64654	676 bp upstream
Rr439	regulatory region 439	888 bp proximal
Rr366704	regulatory region 366704	95 bp upstream
Rr575169	regulatory region 575169	219 bp distal
Rr575170	regulatory region 575170	within coordinates
Sox2	SRY (sex determining region Y)-box 2	676 bp downstream
Sox2ot	SOX2 overlapping transcript (non-protein coding)	within coordinates
Tssr28828	transcription start site region 28828	449 bp upstream
Tssr32982	transcription start site region 32982	852 bp downstream