rs584014889 SNP Detail

Summary

• ID
  rs584014889
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:142325897 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCTA GCTGATTTCC CAGCATTTGA
  C
  ATGTTTAAAG GAACTCAGAT TCACT                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	I/LnJ	KK/HlJ	LEWES/EiJ	LP/J	RIIIS/J	SM/J
ss916483736	MGP_WTSI_3_142620136	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	I/LnJ	KK/HlJ	LEWES/EiJ	LP/J	RIIIS/J	SM/J
rs584014889					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss916483736	MGP_WTSI_3_142620136	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:142325897 () rs orientation: forward

Symbol	Name	Function Class
Gbp2	guanylate binding protein 2	527 bp upstream
Gbp2b	guanylate binding protein 2b	957 bp downstream
Gm54185	predicted gene, 54185	854 bp upstream
Rr398088	regulatory region 398088	within coordinates
Rr586457	regulatory region 586457	1160 bp distal
Rr586458	regulatory region 586458	within coordinates
Rr586459	regulatory region 586459	477 bp proximal
Tssr32216	transcription start site region 32216	1951 bp downstream
Tssr32217	transcription start site region 32217	1913 bp downstream
Tssr32218	transcription start site region 32218	1859 bp downstream
Tssr32219	transcription start site region 32219	1822 bp downstream
Tssr32220	transcription start site region 32220	1808 bp downstream
Tssr32221	transcription start site region 32221	1790 bp downstream
Tssr32222	transcription start site region 32222	1734 bp downstream
Tssr32223	transcription start site region 32223	1677 bp downstream
Tssr32224	transcription start site region 32224	1623 bp downstream
Tssr32225	transcription start site region 32225	1285 bp downstream
Tssr32226	transcription start site region 32226	1245 bp downstream
Tssr32227	transcription start site region 32227	460 bp upstream
Tssr32228	transcription start site region 32228	511 bp upstream
Tssr32229	transcription start site region 32229	550 bp upstream
Tssr32230	transcription start site region 32230	586 bp upstream
Tssr32231	transcription start site region 32231	603 bp upstream
Tssr32232	transcription start site region 32232	1137 bp upstream
Tssr35947	transcription start site region 35947	955 bp upstream