rs583621384 SNP Detail

Summary

• ID
  rs583621384
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:115898093 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGGG AGAGGGAGGG AGGGAGGGAG
  G
  GAGAGAGAGA GAGAGAGAGA GAGAG                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	ST/bJ	SWR/J	ZALENDE/EiJ
ss915648355	MGP_WTSI_2_116067612	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	ST/bJ	SWR/J	ZALENDE/EiJ
rs583621384					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss915648355	MGP_WTSI_2_116067612	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:115898093 () rs orientation: forward

Symbol	Name	Function Class
2700033N17Rik	RIKEN cDNA 2700033N17 gene	within coordinates
G630016G05Rik	RIKEN cDNA G630016G05 gene	within coordinates
Meis2	Meis homeobox 2	1773 bp upstream
Rr562987	regulatory region 562987	1467 bp distal
Rr562988	regulatory region 562988	420 bp distal
Rr562989	regulatory region 562989	within coordinates
Rr562990	regulatory region 562990	367 bp proximal
Rr562991	regulatory region 562991	493 bp proximal
Tssr19467	transcription start site region 19467	362 bp downstream
Tssr19468	transcription start site region 19468	321 bp upstream
Tssr25726	transcription start site region 25726	1956 bp upstream
Tssr25727	transcription start site region 25727	1923 bp upstream
Tssr25728	transcription start site region 25728	1907 bp upstream
Tssr25729	transcription start site region 25729	1877 bp upstream
Tssr25730	transcription start site region 25730	1816 bp upstream
Tssr25731	transcription start site region 25731	1759 bp upstream
Tssr25732	transcription start site region 25732	1647 bp upstream
Tssr25733	transcription start site region 25733	1549 bp upstream
Tssr25734	transcription start site region 25734	471 bp upstream
Tssr25735	transcription start site region 25735	427 bp upstream
Tssr25736	transcription start site region 25736	246 bp upstream
Tssr25737	transcription start site region 25737	203 bp upstream