rs583432277 SNP Detail

Summary

• ID
  rs583432277
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:42562457 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTGTT TTTTTTTGTT TTTTTTTTTT
  K
  TTGTTGTTGT TTCTGTTTTT TTTTT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	CE/J	MA/MyJ	NON/ShiLtJ	QSi3/Ianm	SPRET/EiJ
ss917969907	MGP_WTSI_6_42585523	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	T	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	CE/J	MA/MyJ	NON/ShiLtJ	QSi3/Ianm	SPRET/EiJ
rs583432277					SNP	G	G	T	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss917969907	MGP_WTSI_6_42585523	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:42562457 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm38798	predicted gene, 38798			1970 bp upstream
Rr629347	regulatory region 629347			1716 bp distal
Rr629348	regulatory region 629348			1815 bp distal
Tcaf3	TRPM8 channel-associated factor 3			Intron
				Noncoding-Transcript-Variant
Tssr56046	transcription start site region 56046			297 bp downstream
Tssr56047	transcription start site region 56047			148 bp downstream
Tssr56048	transcription start site region 56048			437 bp upstream
Tssr56049	transcription start site region 56049			487 bp upstream
Tssr60620	transcription start site region 60620			217 bp downstream
Tssr60621	transcription start site region 60621			235 bp downstream
Tssr60622	transcription start site region 60622			281 bp downstream
Tssr60623	transcription start site region 60623			337 bp downstream
Tssr60624	transcription start site region 60624			379 bp downstream
Tssr60625	transcription start site region 60625			447 bp downstream
Tssr60626	transcription start site region 60626			462 bp downstream
Tssr60627	transcription start site region 60627			478 bp downstream
Tssr60628	transcription start site region 60628			622 bp downstream
Tssr60629	transcription start site region 60629			677 bp downstream
Tssr60630	transcription start site region 60630			746 bp downstream
Tssr60631	transcription start site region 60631			790 bp downstream
Tssr60632	transcription start site region 60632			842 bp downstream
Tssr60633	transcription start site region 60633			868 bp downstream
Tssr60634	transcription start site region 60634			881 bp downstream
Tssr60635	transcription start site region 60635			947 bp downstream
Tssr60636	transcription start site region 60636			1052 bp downstream
Tssr60637	transcription start site region 60637			1308 bp downstream
Tssr60638	transcription start site region 60638			1348 bp downstream
Tssr60639	transcription start site region 60639			1399 bp downstream
Tssr60640	transcription start site region 60640			1654 bp downstream