rs582896095 SNP Detail

Summary

• ID
  rs582896095
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:88677965 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAAAA CAGGAGTCAC ATATGACATC
  W
  TTTTCAGGAT TCCAGAAGAG AATGA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	FVB/NJ	I/LnJ	MA/MyJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	RF/J	ST/bJ	ZALENDE/EiJ
ss916911607	MGP_WTSI_4_88759728	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	T	A	A	A	A	A	A	A	A	T	A	A	A	A	T	T	A
SNP Consensus Information
SNP					Consensus Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	FVB/NJ	I/LnJ	MA/MyJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	RF/J	ST/bJ	ZALENDE/EiJ
rs582896095					SNP	A	A	T	A	A	A	A	A	A	A	A	T	A	A	A	A	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss916911607	MGP_WTSI_4_88759728	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:88677965 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14431	CpG island 14431	1967 bp distal
Gm13283	predicted gene 13283	1046 bp upstream
Gm13286	predicted gene 13286	1348 bp downstream
Rr595033	regulatory region 595033	1659 bp distal
Rr595035	regulatory region 595035	1907 bp distal
Rr595036	regulatory region 595036	1565 bp distal
Rr595037	regulatory region 595037	656 bp distal
Rr595038	regulatory region 595038	105 bp proximal
Rr595039	regulatory region 595039	343 bp proximal
Rr595040	regulatory region 595040	839 bp proximal
Rr595041	regulatory region 595041	1002 bp proximal
Rr595042	regulatory region 595042	1344 bp proximal