rs581742255 SNP Detail

Summary

• ID
  rs581742255
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:88677958 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCACA CCCAAAACAG GAGTCACATA
  W
  GACATCATTT TCAGGATTCC AGAAG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CZECHII/EiJ	FVB/NJ	MA/MyJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	RF/J	RIIIS/J	SWR/J
ss916911606	MGP_WTSI_4_88759721	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	A	T	T	T	T	T	T	T	A	T	T	T	T	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CZECHII/EiJ	FVB/NJ	MA/MyJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	RF/J	RIIIS/J	SWR/J
rs581742255					SNP	T	T	A	T	T	T	T	T	T	T	A	T	T	T	T	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss916911606	MGP_WTSI_4_88759721	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:88677958 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14431	CpG island 14431	1960 bp distal
Gm13283	predicted gene 13283	1053 bp upstream
Gm13286	predicted gene 13286	1341 bp downstream
Rr595033	regulatory region 595033	1652 bp distal
Rr595035	regulatory region 595035	1900 bp distal
Rr595036	regulatory region 595036	1558 bp distal
Rr595037	regulatory region 595037	649 bp distal
Rr595038	regulatory region 595038	112 bp proximal
Rr595039	regulatory region 595039	350 bp proximal
Rr595040	regulatory region 595040	846 bp proximal
Rr595041	regulatory region 595041	1009 bp proximal
Rr595042	regulatory region 595042	1351 bp proximal