rs581617543 SNP Detail

Summary

• ID
  rs581617543
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:5285477 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTTC CCTTCCCTTC TCTTCTCTTC
  T
  CTTCTCTTCT CTTCTCTTCT CTTCT                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	FVB/NJ	JF1/MsJ	LEWES/EiJ	LG/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	QSi3/Ianm	RF/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J
ss915872370	MGP_WTSI_3_5220417	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	FVB/NJ	JF1/MsJ	LEWES/EiJ	LG/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	QSi3/Ianm	RF/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J
rs581617543					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss915872370	MGP_WTSI_3_5220417	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:5285477 () rs orientation: forward

Symbol	Name	Function Class
2700069I18Rik	RIKEN cDNA 2700069I18 gene	within coordinates
Rr573172	regulatory region 573172	1853 bp distal
Rr573173	regulatory region 573173	within coordinates
Rr573174	regulatory region 573174	501 bp proximal
Rr573175	regulatory region 573175	1028 bp proximal
Tssr28265	transcription start site region 28265	1873 bp downstream
Tssr28266	transcription start site region 28266	1856 bp downstream
Tssr28267	transcription start site region 28267	1830 bp downstream
Tssr28268	transcription start site region 28268	1803 bp downstream
Tssr28269	transcription start site region 28269	1733 bp downstream
Tssr28270	transcription start site region 28270	1587 bp downstream
Tssr28271	transcription start site region 28271	1381 bp downstream
Tssr28272	transcription start site region 28272	1364 bp downstream
Tssr28273	transcription start site region 28273	1343 bp downstream
Tssr28274	transcription start site region 28274	631 bp upstream
Tssr28275	transcription start site region 28275	772 bp upstream
Tssr28276	transcription start site region 28276	808 bp upstream
Tssr32523	transcription start site region 32523	354 bp downstream
Zfhx4	zinc finger homeodomain 4	Intron