rs581268715 SNP Detail

Summary

• ID
  rs581268715
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:118845517 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGGA GAGGAGAGGA GAGGAGAGGA
  G
  AGGAAAGGAA AGGAAAGGAA AGGAA                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BR/cdJ	C57L/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	LP/J	MOLF/EiJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi5/Ianm	SJL/J	SM/J	ZALENDE/EiJ
ss917029877	MGP_WTSI_4_118988320	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BR/cdJ	C57L/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	LP/J	MOLF/EiJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi5/Ianm	SJL/J	SM/J	ZALENDE/EiJ
rs581268715					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss917029877	MGP_WTSI_4_118988320	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:118845517 () rs orientation: forward

Symbol	Name	Function Class
Gm12861	predicted gene 12861	within coordinates
Gm12864	predicted gene 12864	301 bp downstream
Gm12865	predicted gene 12865	within coordinates
Rr598446	regulatory region 598446	305 bp proximal
Rr598447	regulatory region 598447	395 bp proximal
Tssr38691	transcription start site region 38691	1376 bp downstream
Tssr38692	transcription start site region 38692	849 bp downstream