rs580332779 SNP Detail

Summary

• ID
  rs580332779
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:34827689 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCTT TCTTTCTTTC TTTCTTTCTT
  Y
  CTTCCTTCCT TCCTTCCTTC CTTCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/10J	C57L/J	C58/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	LG/J	LP/J	MOLF/EiJ	NON/ShiLtJ	SEA/GnJ	SJL/J	SM/J	SWR/J
ss916028193	MGP_WTSI_3_34773540	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/10J	C57L/J	C58/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	LG/J	LP/J	MOLF/EiJ	NON/ShiLtJ	SEA/GnJ	SJL/J	SM/J	SWR/J
rs580332779					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss916028193	MGP_WTSI_3_34773540	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:34827689 () rs orientation: forward

Symbol	Name	Function Class
Gm38509	predicted gene, 38509	within coordinates
Gm65307	predicted gene, 65307	within coordinates
Rr575186	regulatory region 575186	126 bp proximal
Rr575187	regulatory region 575187	618 bp proximal