rs580275941 SNP Detail

Summary

• ID
  rs580275941
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:88677511 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGCT GGGCAGATAC CCATGCTCTA
  C
  GGGATTATGT CCGTTTCCCA GCCCA                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeH	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	FVB/NJ	LEWES/EiJ	MA/MyJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	SM/J	ST/bJ	WSB/EiJ	ZALENDE/EiJ
ss916911603	MGP_WTSI_4_88759274	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeH	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	FVB/NJ	LEWES/EiJ	MA/MyJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	SM/J	ST/bJ	WSB/EiJ	ZALENDE/EiJ
rs580275941					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss916911603	MGP_WTSI_4_88759274	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:88677511 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14431	CpG island 14431	1513 bp distal
Gm13283	predicted gene 13283	1500 bp upstream
Gm13286	predicted gene 13286	894 bp downstream
Rr595031	regulatory region 595031	1706 bp distal
Rr595033	regulatory region 595033	1205 bp distal
Rr595034	regulatory region 595034	1632 bp distal
Rr595035	regulatory region 595035	1453 bp distal
Rr595036	regulatory region 595036	1111 bp distal
Rr595037	regulatory region 595037	202 bp distal
Rr595038	regulatory region 595038	559 bp proximal
Rr595039	regulatory region 595039	797 bp proximal
Rr595040	regulatory region 595040	1293 bp proximal
Rr595041	regulatory region 595041	1456 bp proximal
Rr595042	regulatory region 595042	1798 bp proximal