rs580207099 SNP Detail

Summary

• ID
  rs580207099
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:142326025 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTGTC CCTCCAAATT CTCACCTTTT
  T
  CGTTCTATTT TTATTCTTTC ACAGT                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss916483738	MGP_WTSI_3_142620264	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs580207099					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss916483738	MGP_WTSI_3_142620264	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:142326025 () rs orientation: forward

Symbol	Name	Function Class
Gbp2	guanylate binding protein 2	399 bp upstream
Gbp2b	guanylate binding protein 2b	1085 bp downstream
Gm54185	predicted gene, 54185	982 bp upstream
Rr398088	regulatory region 398088	81 bp downstream
Rr586457	regulatory region 586457	1288 bp distal
Rr586458	regulatory region 586458	within coordinates
Rr586459	regulatory region 586459	349 bp proximal
Tssr32218	transcription start site region 32218	1987 bp downstream
Tssr32219	transcription start site region 32219	1950 bp downstream
Tssr32220	transcription start site region 32220	1936 bp downstream
Tssr32221	transcription start site region 32221	1918 bp downstream
Tssr32222	transcription start site region 32222	1862 bp downstream
Tssr32223	transcription start site region 32223	1805 bp downstream
Tssr32224	transcription start site region 32224	1751 bp downstream
Tssr32225	transcription start site region 32225	1413 bp downstream
Tssr32226	transcription start site region 32226	1373 bp downstream
Tssr32227	transcription start site region 32227	332 bp upstream
Tssr32228	transcription start site region 32228	383 bp upstream
Tssr32229	transcription start site region 32229	422 bp upstream
Tssr32230	transcription start site region 32230	458 bp upstream
Tssr32231	transcription start site region 32231	475 bp upstream
Tssr32232	transcription start site region 32232	1009 bp upstream
Tssr35947	transcription start site region 35947	1083 bp upstream