rs580142899 SNP Detail

Summary

• ID
  rs580142899
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:28079299 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATCAC TGATGGCCCA AACTTTTAAT
  Y
  TCAGCACTTG GAAGGCAGAA GCAGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss918617882	MGP_WTSI_7_28379874	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs580142899					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss918617882	MGP_WTSI_7_28379874	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:28079299 () rs orientation: forward

Symbol	Name	Function Class
Gm44710	predicted gene 44710	within coordinates
Gm57214	predicted gene, 57214	538 bp downstream
Gm73795	predicted gene, 73795	1375 bp upstream
Rr368284	regulatory region 368284	660 bp upstream
Rr400210	regulatory region 400210	363 bp downstream
Rr644240	regulatory region 644240	1920 bp distal
Rr644241	regulatory region 644241	884 bp distal
Rr644242	regulatory region 644242	630 bp distal
Rr644243	regulatory region 644243	129 bp distal
Rr644244	regulatory region 644244	256 bp proximal
Rr644245	regulatory region 644245	369 bp proximal
Rr644246	regulatory region 644246	885 bp proximal
Rr644247	regulatory region 644247	1386 bp proximal
Tssr2163	transcription start site region 2163	474 bp upstream
Tssr2164	transcription start site region 2164	372 bp upstream
Tssr2165	transcription start site region 2165	329 bp upstream
Tssr65464	transcription start site region 65464	1821 bp downstream
Tssr65465	transcription start site region 65465	484 bp downstream
Tssr65466	transcription start site region 65466	1385 bp upstream
Tssr65467	transcription start site region 65467	1409 bp upstream
Tssr65468	transcription start site region 65468	1518 bp upstream
Tssr71497	transcription start site region 71497	1995 bp upstream
Tssr71498	transcription start site region 71498	1934 bp upstream
Tssr71499	transcription start site region 71499	1840 bp upstream
Tssr71500	transcription start site region 71500	1816 bp upstream
Tssr71501	transcription start site region 71501	1789 bp upstream
Tssr71502	transcription start site region 71502	1764 bp upstream
Tssr71503	transcription start site region 71503	1723 bp upstream
Tssr71504	transcription start site region 71504	1692 bp upstream
Tssr71505	transcription start site region 71505	1675 bp upstream
Tssr71506	transcription start site region 71506	1661 bp upstream
Tssr71507	transcription start site region 71507	1614 bp upstream
Tssr71508	transcription start site region 71508	1580 bp upstream
Tssr71509	transcription start site region 71509	1520 bp upstream
Tssr71510	transcription start site region 71510	1476 bp upstream
Tssr71511	transcription start site region 71511	1440 bp upstream
Tssr71512	transcription start site region 71512	1360 bp upstream
Tssr71513	transcription start site region 71513	773 bp upstream
Tssr71514	transcription start site region 71514	639 bp upstream
Tssr71515	transcription start site region 71515	611 bp upstream
Tssr71516	transcription start site region 71516	407 bp downstream
Tssr71517	transcription start site region 71517	1053 bp downstream
Tssr71518	transcription start site region 71518	1075 bp downstream
Tssr71519	transcription start site region 71519	1096 bp downstream
Tssr71520	transcription start site region 71520	1140 bp downstream
Tssr71521	transcription start site region 71521	1152 bp downstream
Tssr71522	transcription start site region 71522	1194 bp downstream
Tssr71523	transcription start site region 71523	1418 bp downstream
Zfp36	zinc finger protein 36	mRNA-UTR