rs580100059 SNP Detail

Summary

• ID
  rs580100059
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:88680216 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGCA CGCCACAGTC CCGGTGTTTC
  R
  CATAAACACC AGGGGGCAGA TGGGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CE/J	DBA/2J	FVB/NJ	MA/MyJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	SEA/GnJ	ZALENDE/EiJ
ss916911620	MGP_WTSI_4_88761979	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	G	G	A	A	A	A	A	A	A	G	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CE/J	DBA/2J	FVB/NJ	MA/MyJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	SEA/GnJ	ZALENDE/EiJ
rs580100059					SNP	A	A	G	G	A	A	A	A	A	A	A	G	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss916911620	MGP_WTSI_4_88761979	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:88680216 () rs orientation: forward

Symbol	Name	Function Class
Gm13283	predicted gene 13283	395 bp downstream
Gm13284	predicted gene 13284	1730 bp upstream
Rr595038	regulatory region 595038	1850 bp distal
Rr595039	regulatory region 595039	1887 bp distal
Rr595040	regulatory region 595040	1374 bp distal
Rr595041	regulatory region 595041	1228 bp distal
Rr595042	regulatory region 595042	886 bp distal
Rr595043	regulatory region 595043	2 bp proximal
Rr595044	regulatory region 595044	877 bp proximal
Rr595045	regulatory region 595045	1027 bp proximal
Rr595046	regulatory region 595046	1523 bp proximal
Rr595047	regulatory region 595047	1686 bp proximal