rs579986545 SNP Detail

Summary

• ID
  rs579986545
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141813284 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTGT GTGTGTGTGT GTGTGTGTGT
  R
  TGTGTGTGTG CAGTCCATTG TGGGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/2J	JF1/MsJ	KK/HlJ	LG/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	QSi3/Ianm	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ZALENDE/EiJ
ss917118192	MGP_WTSI_4_142085973	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	A	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/2J	JF1/MsJ	KK/HlJ	LG/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	QSi3/Ianm	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ZALENDE/EiJ
rs579986545					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	A	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss917118192	MGP_WTSI_4_142085973	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141813284 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15252	CpG island 15252	1163 bp distal
Rr603988	regulatory region 603988	1623 bp distal
Rr603989	regulatory region 603989	1652 bp distal
Rr603990	regulatory region 603990	254 bp distal
Rr603991	regulatory region 603991	993 bp distal
Tmem51	transmembrane protein 51	1669 bp upstream
Tmem51os1	Tmem51 opposite strand 1	within coordinates
Tssr44419	transcription start site region 44419	1754 bp upstream
Tssr44420	transcription start site region 44420	1711 bp upstream
Tssr44421	transcription start site region 44421	1410 bp upstream
Tssr44422	transcription start site region 44422	1290 bp upstream