rs579689436 SNP Detail

Summary

• ID
  rs579689436
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:120464176 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTCC CTCCCTCCCT CCCTCCCTCC
  Y
  TCCCTCCCTC CCTCCCTCTC TGCCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/10SnJ	CAST/EiJ	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SPRET/EiJ	SWR/J
ss917034488	MGP_WTSI_4_120606979	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	T	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/10SnJ	CAST/EiJ	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SPRET/EiJ	SWR/J
rs579689436					SNP	C	C	C	C	C	C	C	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss917034488	MGP_WTSI_4_120606979	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:120464176 () rs orientation: forward

Symbol	Name	Function Class
D4Mit76	DNA segment, Chr 4, Massachusetts Institute of Technology 76	1735 bp distal
Gm8439	predicted gene 8439	Intron
Gm12860	predicted gene 12860	within coordinates
Rr598831	regulatory region 598831	2 bp proximal