rs579506898 SNP Detail

Summary

• ID
  rs579506898
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:180534156 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGGG AAGGCCTAGA GTGGCGTGGG
  K
  TTTTTTTTTT TTTTTTTTTT GTTTT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss915854611	MGP_WTSI_2_180892363	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs579506898					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss915854611	MGP_WTSI_2_180892363	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:180534156 () rs orientation: forward

Symbol	Name	Function Class
2810461L16Rik	RIKEN cDNA 2810461L16 gene	within coordinates
Cpgi12907	CpG island 12907	556 bp distal
Cpgi12908	CpG island 12908	90 bp proximal
Gm27032	predicted gene, 27032	Intron
Gm57443	predicted gene, 57443	within coordinates
Mir124a-3	microRNA 124a-3	1677 bp upstream
Rr572871	regulatory region 572871	1861 bp distal
Rr572872	regulatory region 572872	1967 bp distal
Rr572873	regulatory region 572873	1713 bp distal
Rr572874	regulatory region 572874	1504 bp distal
Rr572875	regulatory region 572875	1034 bp distal
Rr572876	regulatory region 572876	533 bp distal
Rr572877	regulatory region 572877	within coordinates
Rr572878	regulatory region 572878	405 bp proximal
Rr572879	regulatory region 572879	584 bp proximal
Rr572880	regulatory region 572880	683 bp proximal
Rr572881	regulatory region 572881	725 bp proximal
Rr572882	regulatory region 572882	1050 bp proximal
Tssr22274	transcription start site region 22274	1677 bp downstream
Tssr22275	transcription start site region 22275	1665 bp downstream
Tssr22276	transcription start site region 22276	1651 bp downstream
Tssr22277	transcription start site region 22277	1510 bp downstream
Tssr22278	transcription start site region 22278	758 bp upstream
Tssr28138	transcription start site region 28138	568 bp downstream
Tssr28139	transcription start site region 28139	1038 bp downstream
Tssr28140	transcription start site region 28140	1045 bp downstream