rs579291154 SNP Detail

Summary

• ID
  rs579291154
• Variation Type
  SNP
• Alleles
  C/G/T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:138188765 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTTC TTAGTGATGG ATGGCGGGGG
  B
  GGGGGGGCAG CCCACTGTGG GTGGG                                      
  
  B = C/G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BR/cdJ	C58/J	CAST/EiJ	DBA/1J	JF1/MsJ	LP/J	MOLF/EiJ	NZO/HlLtJ	RF/J	SEA/GnJ	SM/J	SPRET/EiJ
ss917105233	MGP_WTSI_4_138461454	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	G	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BR/cdJ	C58/J	CAST/EiJ	DBA/1J	JF1/MsJ	LP/J	MOLF/EiJ	NZO/HlLtJ	RF/J	SEA/GnJ	SM/J	SPRET/EiJ
rs579291154					SNP	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss917105233	MGP_WTSI_4_138461454	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:138188765 () rs orientation: forward

Symbol	Name	Function Class
Camk2n1	calcium/calmodulin-dependent protein kinase II inhibitor 1	1328 bp downstream
Gm70162	predicted gene, 70162	748 bp downstream
Rr2025	regulatory region 2025	1373 bp proximal
Rr602934	regulatory region 602934	1345 bp distal
Rr602935	regulatory region 602935	1528 bp distal
Rr602936	regulatory region 602936	1227 bp proximal
Rr602937	regulatory region 602937	1648 bp proximal
Rr602938	regulatory region 602938	1721 bp proximal
Tssr44170	transcription start site region 44170	1522 bp upstream